pal.alignment
Interfaces
Alignment
AnnotationAlignment
CharacterAlignment
Classes
AbstractAlignment
AlignmentUtils
AminoAcidAlignment
BootstrappedAlignment
CodonAlignment
ConcatenatedAlignment
ConcatenatedAnnotatedAlignment
GapBalancedAlignment
Genotype
IndelAlignment
IndelAnnotatedAlignment
JumbledAlignment
MultiLocusAnnotatedAlignment
ReadAlignment
SimpleAlignment
SimpleAnnotatedAlignment
SimpleCharacterAlignment
SitePattern
StrippedAlignment
StrippedAnnotatedAlignment
Exceptions
AlignmentParseException