Overview
Package
Class
Tree
Deprecated
Index
Help
PREV
NEXT
FRAMES
NO FRAMES
Hierarchy For Package pal.substmodel
Package Hierarchies:
All Packages
Class Hierarchy
class java.lang.Object
class pal.substmodel.
AbstractRateMatrix
(implements pal.substmodel.
RateMatrix
)
class pal.substmodel.
AminoAcidModel
(implements pal.substmodel.
RateMatrix
)
class pal.substmodel.
BLOSUM62
(implements pal.util.
XMLConstants
)
class pal.substmodel.
CPREV
(implements pal.util.
XMLConstants
)
class pal.substmodel.
Dayhoff
(implements pal.util.
XMLConstants
)
class pal.substmodel.
JTT
(implements pal.util.
XMLConstants
)
class pal.substmodel.
MTREV24
(implements pal.util.
XMLConstants
)
class pal.substmodel.
VT
(implements pal.util.
XMLConstants
)
class pal.substmodel.
WAG
(implements pal.util.
XMLConstants
)
class pal.substmodel.
CodonModel
(implements pal.substmodel.
RateMatrix
, java.io.Serializable)
class pal.substmodel.
YangCodonModel
(implements java.io.Serializable, pal.util.
XMLConstants
)
class pal.substmodel.
NucleotideModel
(implements pal.substmodel.
RateMatrix
, java.io.Serializable)
class pal.substmodel.
F81
(implements java.io.Serializable, pal.util.
XMLConstants
)
class pal.substmodel.
F84
(implements java.io.Serializable, pal.util.
XMLConstants
)
class pal.substmodel.
GTR
(implements java.io.Serializable, pal.util.
XMLConstants
)
class pal.substmodel.
HKY
(implements java.io.Serializable, pal.util.
XMLConstants
)
class pal.substmodel.
TN
(implements pal.util.
XMLConstants
)
class pal.substmodel.
TwoStateModel
(implements pal.substmodel.
RateMatrix
, pal.util.
XMLConstants
)
class pal.substmodel.
CachedRateMatrix
(implements pal.misc.
PalObjectListener
, pal.substmodel.
RateMatrix
)
class pal.substmodel.
MatrixExponential
(implements java.lang.Cloneable, java.io.Serializable)
class pal.substmodel.
RateDistribution
(implements java.lang.Cloneable, pal.misc.
Parameterized
, pal.misc.
Report
, java.io.Serializable)
class pal.substmodel.
GammaRates
class pal.substmodel.
InvariableSites
(implements java.io.Serializable)
class pal.substmodel.
UniformRate
(implements java.io.Serializable)
class pal.substmodel.
RateMatrixUtils
class pal.substmodel.
SimpleSubstitutionModel
(implements pal.substmodel.
SubstitutionModel
)
Interface Hierarchy
interface java.lang.Cloneable
interface pal.substmodel.
RateMatrix
(also extends pal.misc.
NamedParameterized
, pal.misc.
Report
, java.io.Serializable)
interface pal.misc.
Parameterized
interface pal.misc.
NamedParameterized
interface pal.substmodel.
RateMatrix
(also extends java.lang.Cloneable, pal.misc.
Report
, java.io.Serializable)
interface pal.substmodel.
SubstitutionModel
(also extends pal.misc.
Report
, java.io.Serializable)
interface pal.misc.
Report
interface pal.substmodel.
RateMatrix
(also extends java.lang.Cloneable, pal.misc.
NamedParameterized
, java.io.Serializable)
interface pal.substmodel.
SubstitutionModel
(also extends pal.misc.
Parameterized
, java.io.Serializable)
interface java.io.Serializable
interface pal.substmodel.
AminoAcidModelID
interface pal.substmodel.
NucleotideModelID
interface pal.substmodel.
RateMatrix
(also extends java.lang.Cloneable, pal.misc.
NamedParameterized
, pal.misc.
Report
)
interface pal.substmodel.
SubstitutionModel
(also extends pal.misc.
Parameterized
, pal.misc.
Report
)
Overview
Package
Class
Tree
Deprecated
Index
Help
PREV
NEXT
FRAMES
NO FRAMES