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java.lang.Object | +--pal.distance.DistanceMatrix | +--pal.distance.ReadDistanceMatrix
reads pairwise distance matrices in PHYLIP format (full matrix)
Fields inherited from class pal.distance.DistanceMatrix |
distance, idGroup, numSeqs |
Constructor Summary | |
ReadDistanceMatrix(java.io.PushbackReader input)
read from stream |
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ReadDistanceMatrix(java.lang.String file)
read from file |
Methods inherited from class pal.distance.DistanceMatrix |
absoluteDistance, addDistance, getDistances, getIdCount, getIdentifier, getIdGroup, getSize, isSymmetric, meanDistance, printPHYLIP, setDistance, setIdentifier, squaredDistance, toString, whichIdNumber |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
public ReadDistanceMatrix(java.io.PushbackReader input) throws DistanceParseException
public ReadDistanceMatrix(java.lang.String file) throws DistanceParseException, java.io.IOException
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