pal.tree
Class UPGMATree

java.lang.Object
  |
  +--pal.tree.SimpleTree
        |
        +--pal.tree.UPGMATree
All Implemented Interfaces:
Report, java.io.Serializable, Tree, Units
Direct Known Subclasses:
SUPGMATree

public class UPGMATree
extends SimpleTree

constructs a UPGMA tree from pairwise distances

See Also:
Serialized Form

Fields inherited from interface pal.misc.Units
DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, YEARS
 
Constructor Summary
UPGMATree(DistanceMatrix m)
          constructor UPGMA tree
 
Methods inherited from class pal.tree.SimpleTree
createNodeList, findNode, getAttribute, getExternalNode, getExternalNodeCount, getInternalNode, getInternalNodeCount, getRoot, getUnits, report, reroot, reroot, setAttribute, setRoot, setUnits, toString
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

UPGMATree

public UPGMATree(DistanceMatrix m)
constructor UPGMA tree
Parameters:
m - distance matrix