pal.datatype
Interface TransitionPenaltyTable

All Known Implementing Classes:
IUPACPenaltyTable

public interface TransitionPenaltyTable

Implements a table of transition penalties for a particular datatype. Used for alignment scoring.


Method Summary
 DataType getDataType()
           
 double penalty(int a, int b)
           
 

Method Detail

penalty

public double penalty(int a,
                      int b)

getDataType

public DataType getDataType()