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java.lang.Object | +--pal.coalescent.SerialCoalescentSimulator
Simulates a set of coalescent intervals given a demographic model.
Constructor Summary | |
SerialCoalescentSimulator()
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Method Summary | |
Tree |
getTree()
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CoalescentIntervals |
simulateIntervals(TimeOrderCharacterData tocd,
DemographicModel model,
boolean createTree)
Simulates a set of CoalescentIntervals from a genealogy. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public SerialCoalescentSimulator()
Method Detail |
public CoalescentIntervals simulateIntervals(TimeOrderCharacterData tocd, DemographicModel model, boolean createTree)
tocd
- the time order character data determining the
order and time in which samples are added.model
- the demographic model to usepublic Tree getTree()
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