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java.lang.Object | +--pal.tree.SimpleTree | +--pal.tree.NeighborJoiningTree
constructs a neighbor-joining tree from pairwise distances
Fields inherited from interface pal.misc.Units |
DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, YEARS |
Constructor Summary | |
NeighborJoiningTree(DistanceMatrix m)
construct NJ tree |
Methods inherited from class pal.tree.SimpleTree |
createNodeList, findNode, getAttribute, getExternalNode, getExternalNodeCount, getInternalNode, getInternalNodeCount, getRoot, getUnits, report, reroot, reroot, setAttribute, setRoot, setUnits, toString |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
public NeighborJoiningTree(DistanceMatrix m)
m
- distance matrix
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